bgc_data_processing.providers.cmems

Specific parameters to load CMEMS-provided data.

loader = DataSource(provider_name='CMEMS', data_format='netcdf', dirin=Path(PROVIDERS_CONFIG['CMEMS']['PATH']), data_category=PROVIDERS_CONFIG['CMEMS']['CATEGORY'], excluded_files=PROVIDERS_CONFIG['CMEMS']['EXCLUDE'], files_pattern=FileNamePattern('.*.nc'), variable_ensemble=SourceVariableSet(provider=VARS['provider'].not_in_file(), expocode=VARS['expocode'].not_in_file(), date=VARS['date'].in_file_as('TIME'), year=VARS['year'].not_in_file(), month=VARS['month'].not_in_file(), day=VARS['day'].not_in_file(), hour=VARS['hour'].not_in_file(), longitude=VARS['longitude'].in_file_as('LONGITUDE'), latitude=VARS['latitude'].in_file_as('LATITUDE'), depth=VARS['depth'].in_file_as('DEPH', 'PRES').remove_when_nan().correct_with(lambda : -np.abs(x)), temperature=VARS['temperature'].in_file_as(('TEMP', 'TEMP_QC', [1])), salinity=VARS['salinity'].in_file_as(('PSAL', 'PSL_QC', [1])), oxygen=VARS['oxygen'].in_file_as('DOX1').correct_with(units.convert_doxy_ml_by_l_to_mmol_by_m3), phosphate=VARS['phosphate'].in_file_as(('PHOS', 'PHOS_QC', [1])).remove_when_all_nan(), nitrate=VARS['nitrate'].in_file_as(('NTRA', 'NTRA_QC', [1])).remove_when_all_nan(), silicate=VARS['silicate'].in_file_as(('SLCA', 'SLCA_QC', [1])).remove_when_all_nan(), chlorophyll=VARS['chlorophyll'].in_file_as(('CPHL', 'CPHL_QC', [1])).remove_when_all_nan())) module-attribute