bgc_data_processing.providers.ices

Specific parameters to load ICES-provided data.

loader = DataSource(provider_name='ICES', data_format='csv', dirin=Path(PROVIDERS_CONFIG['ICES']['PATH']), data_category=PROVIDERS_CONFIG['ICES']['CATEGORY'], excluded_files=PROVIDERS_CONFIG['ICES']['EXCLUDE'], files_pattern=FileNamePattern('ices_{years}.csv'), variable_ensemble=SourceVariableSet(provider=VARS['provider'].not_in_file(), expocode=VARS['expocode'].in_file_as('Cruise'), date=VARS['date'].in_file_as('DATE'), year=VARS['year'].not_in_file(), month=VARS['month'].not_in_file(), day=VARS['day'].not_in_file(), hour=VARS['hour'].not_in_file(), longitude=VARS['longitude'].in_file_as('LONGITUDE'), latitude=VARS['latitude'].in_file_as('LATITUDE'), depth=VARS['depth'].in_file_as('DEPTH').remove_when_nan().correct_with(lambda : -x), temperature=VARS['temperature'].in_file_as('CTDTMP'), salinity=VARS['salinity'].in_file_as('CTDSAL'), oxygen=VARS['oxygen'].in_file_as('DOXY').correct_with(units.convert_doxy_ml_by_l_to_mmol_by_m3), phosphate=VARS['phosphate'].in_file_as('PHOS').remove_when_all_nan(), nitrate=VARS['nitrate'].in_file_as('NTRA').remove_when_all_nan(), silicate=VARS['silicate'].in_file_as('SLCA').remove_when_all_nan(), chlorophyll=VARS['chlorophyll'].in_file_as('CPHL').remove_when_all_nan()), read_params={'low_memory': False, 'skiprows': [1]}) module-attribute