bgc_data_processing.providers.imr

Specific parameters to load IMR-provided data.

loader = DataSource(provider_name='IMR', data_format='csv', dirin=Path(PROVIDERS_CONFIG['IMR']['PATH']), data_category=PROVIDERS_CONFIG['IMR']['CATEGORY'], excluded_files=PROVIDERS_CONFIG['IMR']['EXCLUDE'], files_pattern=FileNamePattern('imr_{years}.csv'), variable_ensemble=SourceVariableSet(provider=VARS['provider'].not_in_file(), expocode=VARS['expocode'].not_in_file(), date=VARS['date'].not_in_file(), year=VARS['year'].in_file_as('Year'), month=VARS['month'].in_file_as('Month'), day=VARS['day'].in_file_as('Day'), hour=VARS['hour'].not_in_file(), longitude=VARS['longitude'].in_file_as('Long'), latitude=VARS['latitude'].in_file_as('Lati'), depth=VARS['depth'].in_file_as('Depth').remove_when_nan(), temperature=VARS['temperature'].in_file_as('Temp'), salinity=VARS['salinity'].in_file_as('Saln.'), oxygen=VARS['oxygen'].in_file_as('Oxygen', 'Doxy').correct_with(units.convert_doxy_ml_by_l_to_mmol_by_m3), phosphate=VARS['phosphate'].in_file_as('Phosphate').remove_when_all_nan(), nitrate=VARS['nitrate'].in_file_as('Nitrate').remove_when_all_nan(), silicate=VARS['silicate'].in_file_as('Silicate').remove_when_all_nan(), chlorophyll=VARS['chlorophyll'].in_file_as('Chl.').remove_when_all_nan()), read_params={'low_memory': False, 'delim_whitespace': True, 'skiprows': [1]}) module-attribute